Packages
Bioinformatics software and web servers from Jia-Ming Chang’s lab: HiCmapTools, TCS, PSI/TM-Coffee, wpSBOOT, PSLDoc and GODoc.
Web Server
- Transitive Consistency Score — Estimate the confidence of the alignment
- BigBigTree — Tree reconstruction for large orthologous family
- PSI/TM-Coffee — Transmembrane MSA
Software
- wpSBOOT — weighted partial Super Bootstrap (docs)
- PSLCNN — Protein Subcellular Localization using Convolutional Neural Network
- HiCmapTools — a commend line tool to access HiC maps. The complete program provides multi-query modes and analysis tools.
- PSLDoc — Protein Subcellular Localization Prediction based on based on gapped-dipeptides and probabilistic latent semantic analysis
- FCS — Finding Compact Set